PriorityPruner 0.1.4 – Prune a list of SNPs, while keeping/selecting SNPs of higher Priority

PriorityPruner 0.1.4

:: DESCRIPTION

PriorityPruner is a software program which can prune a list of SNPs that are in high linkage disequilibrium (LD) with other SNPs in the list, while preferentially keeping/selecting SNPs of higher priority (e.g., the most significant SNPs in a genome-wide association study).

::DEVELOPER

PriorityPruner team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • Java

:: DOWNLOAD

 PriorityPruner

:: MORE INFORMATION

PRIORITY 2.1.0 – de novo Motif Discovery

PRIORITY 2.1.0

:: DESCRIPTION

PRIORITY is a tool for de novo motif discovery in the context of transcription factor (TF) binding sites. It implements a new approach to motif discovery in which informative priors over sequence positions are used to guide the search.

::DEVELOPER

Alex Hartemink

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

  PRIORITY

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Jul 15;22(14):e384-92.
Informative priors based on transcription factor structural class improve de novo motif discovery.
Narlikar L, Gordan R, Ohler U, Hartemink AJ.