PRESTO 1.01 – Calculation of Order Statistic Distributions and Multiple-testing Adjusted P-values via Permutation

PRESTO 1.01

:: DESCRIPTION

PRESTO is optimized software for permutation testing and for computing empirical distributions of order statistics via permutation. PRESTO is extremely fast and can efficiently analyze data from one and two-stage whole genome association studies with millions of markers genotyped on thousands of samples.

::DEVELOPER

Brian L. Browning

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
Java

:: DOWNLOAD

PRESTO

:: MORE INFORMATION

Citation:

B L Browning (2008)
PRESTO: Rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies.
BMC Bioinformatics 9:309.

pRESTO 0.5.13 – Processing raw reads from high-throughput Sequencing of Lymphocyte Repertoires

pRESTO 0.5.13

:: DESCRIPTION

pRESTO (REpertoire Sequencing TOolkit) is an integrated collection of platform-independent Python modules for processing raw reads from high-throughput (next-generation) sequencing of lymphocyte repertoires.

::DEVELOPER

Kleinstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows/ MacOsX
Python
Biopython
MUSCLE

:: DOWNLOAD

pRESTO

:: MORE INFORMATION

Citation

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
Vander Heiden JA, Yaari G, Uduman M, Stern JN, O’Connor KC, Hafler DA, Vigneault F, Kleinstein SH.
Bioinformatics. 2014 Mar 26.