PRINSEQ 0.20.4 – Preprocess and Generate Statistics about Sequence data

PRINSEQ 0.20.4

:: DESCRIPTION

PRINSEQ (PReprocessing and INformation of SEQuence data.) is a tool that generates summary statistics of sequence and quality data and that is used to filter, reformat and trim next-generation sequence data. It is particular designed for 454/Roche data, but can also be used for other types of sequence data. PRINSEQ is available through a user-friendly web interface or as standalone version. The standalone version is primarily designed for data preprocessing and does not generate summary statistics in graphical form.

PRINSEQ Online Version

::DEVELOPER

the Edwards Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac OsX / Linux /
  • Perl

:: DOWNLOAD

 PRINSEQ

:: MORE INFORMATION

Citation:

Schmieder R and Edwards R
Quality control and preprocessing of metagenomic datasets.
Bioinformatics 2011, 27:863-864.

HapMap filter 1.0 – Preprocess the HapMap Genotypic data for Association Studies

HapMap filter 1.0

:: DESCRIPTION

HapMap filter is a tool to preprocess the HapMap genotypic data for association studies.

::DEVELOPER

Dr. Wei Zhang, wzhang1@uchicago.edu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • C++ Compiler

:: DOWNLOAD

 HapMap filter

:: MORE INFORMATION

Citation

HapMap filter 1.0: a tool to preprocess the HapMap genotypic data for association studies.
Zhang W, Duan S, Dolan ME.
Bioinformation. 2008 May 13;2(8):322-4.