:: DESCRIPTION
The web-server iMiRNA-PseDPC was developed for identifying the real microRNA precursors and false microRNA precursors.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
J Biomol Struct Dyn. 2015 Feb 3:1-28. [Epub ahead of print]
iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach.
Liu B1, Fang L, Liu F, Wang X, Chou KC.
:: DESCRIPTION
miRNA-deKmer is a web server of identification of microRNA precursor with the degenerate K-tuple or Kmer strategy.
::DEVELOPER
Liu Lab, Harbin Institute of Technology Shenzhen Graduate School.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy.
Liu B, Fang L, Wang S, Wang X, Li H, Chou KC.
J Theor Biol. 2015 Nov 21;385:153-9. doi: 10.1016/j.jtbi.2015.08.025.
:: DESCRIPTION
The web-server iMcRNA was developed for identifying the real microRNA precursors and false microRNA precursors.
miRNA-dis: microRNA precursor identification based on distance structure status pairs
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Identification of real microRNA precursors with a pseudo structure status composition approach.
Liu B, Fang L, Liu F, Wang X, Chen J, Chou KC.
PLoS One. 2015 Mar 30;10(3):e0121501. doi: 10.1371/journal.pone.0121501.
Mol Biosyst. 2015 Apr;11(4):1194-204. doi: 10.1039/c5mb00050e.
miRNA-dis: microRNA precursor identification based on distance structure status pairs.
Liu B1, Fang L, Chen J, Liu F, Wang X.
:: DESCRIPTION
miRNAFold is a fast ab-initio algorithm for searching for pre-miRNA precursors in genomes.
::DEVELOPER
EVRY RNA – IBISC
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
miRNAFold: a web server for fast miRNA precursor prediction in genomes.
Tav C, Tempel S, Poligny L, Tahi F.
Nucleic Acids Res. 2016 May 29. pii: gkw459.
Nucleic Acids Res. 2012 Jun;40(11):e80. doi: 10.1093/nar/gks146. Epub 2012 Feb 22.
A fast ab-initio method for predicting miRNA precursors in genomes.
Tempel S1, Tahi F.
:: DESCRIPTION
A java based mining tool mirnaDetect is developed for detect potential pre-miRNAs from the genome-scale data. This program is based both on search and machine learning algorithms.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov 8.
Improved and Promising Identification of Human MicroRNAs by Incorporating a High-quality Negative Set.
Wei L, Liao M, Gao Y, Ji R, He Z, Zou Q.
:: DESCRIPTION
NeuroPID is a prediction tool for Neuropeptide Precursors (NPPs) and Neuromodulators
::DEVELOPER
The Sudarsky Center for Computational Biology – The Hebrew University of Jerusalem
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
NeuroPID: a classifier of neuropeptide precursors.
Karsenty S, Rappoport N, Ofer D, Zair A, Linial M.
Nucleic Acids Res. 2014 Jul;42(Web Server issue):W182-6. doi: 10.1093/nar/gku363.
:: DESCRIPTION
PeptideReranking includes three peptide reranking methods: PPMRanker, PPIRanker, and MIRanker. PPMRanker only uses Protein-Peptide Map (PPM) information from the protein database, PPIRanker only uses Precursor Peak Intensity (PPI) information, and MIRanker employs both PPM information and PPI information.
::DEVELOPER
Laboratory for Bioinformatics and Computational Biology, HKUST
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1212-9. doi: 10.1109/TCBB.2012.29.
Peptide reranking with protein-peptide correspondence and precursor peak intensity information.
Yang C1, He Z, Yang C, Yu W.
:: DESCRIPTION
PITUFO is a java software to find minimal sets of precursors of target compounds in a metabolic network.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS Comput Biol. 2010 Sep 2;6(9). pii: e1000904. doi: 10.1371/journal.pcbi.1000904.
Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata.
Cottret L, Milreu PV, Acuña V, Marchetti-Spaccamela A, Stougie L, Charles H, Sagot MF.