EnPPIpred – Enteropathogen Protein Protein Interactions (PPIs) Prediction

EnPPIpred

:: DESCRIPTION

EnPPIpred is a web server that predicts intra protein protein interaction of entheropathogen including Escherichia coli (E. coli), Salmonella Typhi, Shigella flexneri, Vibrio cholerae & Yersinia entrocolitica.Escherichia coli (E. coli) data set was used to build Support Vector Machine model.

::DEVELOPER

EnPPIpred team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study.
Barman RK, Jana T, Das S, Saha S.
PLoS One. 2015 Dec 30;10(12):e0145648. doi: 10.1371/journal.pone.0145648.

InterSPPI v1.3 – AraPathogen predicts PPIs between Arabidopsis thaliana and pathogens

InterSPPI v1.3

:: DESCRIPTION

InterSPPI is a web server that could predict protein-protein interactions (PPIs) between Arabidopsis thaliana and pathogens based on sequence and Arabidopsis thaliana intra-species PPI network (AraPPI) information.

::DEVELOPER

Ziding Zhang’s Lab, China Agricultural University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

InterSPPI

:: MORE INFORMATION

Citation

Brief Bioinform. 2019 Jan 18;20(1):274-287. doi: 10.1093/bib/bbx123.
Critical assessment and performance improvement of plant-pathogen protein-protein interaction prediction methods.
Yang S, Li H, He H, Zhou Y, Zhang Z.