Tag: post-alignment

Biscap and cfdr 0.11 – Scripts for post-alignment Snp-calling and Verification

Biscap and cfdr 0.11

:: DESCRIPTION

Biscap and cfdr is a script for determining homozygous and heterozygous positions from an alignment using binomial probabilities from a predicted error rate (BiSCaP) and a method to benchmark the accuracy of this and other alignment/SNP-calling methods (cFDR)

::DEVELOPER

Biscap and cfdr team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Perl

:: DOWNLOAD

 Biscap and cfdr

:: MORE INFORMATION

Citation

Sci Rep. 2013;3:1512. doi: 10.1038/srep01512.
Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects.
Farrer RA1, Henk DA, MacLean D, Studholme DJ, Fisher MC.