treemix 1.13 – Inference of Population Trees with Admixture

treemix 1.13

:: DESCRIPTION

TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations. In the underlying model, the modern-day populations in a species are related to a common ancestor via a graph of ancestral populations. We use the allele frequencies in the modern populations to infer the structure of this graph.

::DEVELOPER

Pritchard Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  treemix

:: MORE INFORMATION

Citation:

Pickrell JK and Pritchard JK.
Inference of population splits and mixtures from genome-wide allele frequency data.
PLoS Genet 8(11): e1002967. doi:10.1371/journal.pgen.1002967

POPTREE 2 / POPTREEW – Make Population Trees from Allele Frequency data

POPTREE 2 / POPTREEW

:: DESCRIPTION

POPTREE is a program for making population trees from allele frequency data

POPTREEW is a web version of POPTREE for construction of population trees from allele frequency data and computing other quantities

::DEVELOPER

Naoko Takezaki

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Unix

:: DOWNLOAD

 PopTree

:: MORE INFORMATION

Citation:

POPTREEW: web version of POPTREE for constructing population trees from allele frequency data and computing some other quantities.
Takezaki N, Nei M, Tamura K.
Mol Biol Evol. 2014 Jun;31(6):1622-4. doi: 10.1093/molbev/msu093

POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface.
Takezaki N, Nei M, Tamura K.
Mol Biol Evol. 2010 Apr;27(4):747-52. Epub 2009 Dec 18.

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