PlatinumCNV 1.0 – Bayesian Gaussian mixture model for Genotyping Copy Number Polymorphisms

PlatinumCNV 1.0

:: DESCRIPTION

PlatinumCNV is a software package to fit a Bayesian Gaussian mixture model (GMM) on the SNP array signal intensity data, and infer individual’s allele-specific copy number genotypes at genome-wide SNP loci in a SNP array.

::DEVELOPER

Kumasaka Natsuhiko

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 PlatinumCNV

:: MORE INFORMATION

Citation

Kumasaka N., et al. (2011)
PlatinumCNV: a Bayesian Gaussian mixture model for genotyping copy number polymorphisms using SNP array intensity data.
Genet. Epidemiol. 35:8, 831-844.

VariScan 2.0.3 – Analysis of DNA Sequence Polymorphisms at the Whole Genome-scale

VariScan 2.0.3

:: DESCRIPTION

VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome-scale. The software, i) allows estimating a number of population genetic parameters; ii) conducts the analysis by using the sliding window or a wavelet transform-based methods to capture relevant information from DNA polymorphism data; iii) permits the visualization of the results by commonly used genome browsers.

::DEVELOPER

Molecular Evolutionary Genetics Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac OsX/  Linux
  • C++ Complier

:: DOWNLOAD

VariScan

:: MORE INFORMATION

Citation

Hutter, S., Vilella, A, J. and Rozas, J. (2006).
Genome-wide DNA polymorphism analyses using VariScan.
BMC Bioinformatics 7: 409.