PLINK 1.90 b – Whole Genome Association Analysis Toolset

PLINK 1.90 b

:: DESCRIPTION

PLINK is a comprehensive toolset for statistical analysis in whole-genome association studies, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

::DEVELOPER

Purcell Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX / Windows

:: DOWNLOAD

PLINK

:: MORE INFORMATION

Citation

Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ & Sham PC (2007)
PLINK: a toolset for whole-genome association and population-based linkage analysis.
American Journal of Human Genetics, 81.

P2S 20150226 – Converting files from Plink to Sumstat format

P2S 20150226

:: DESCRIPTION

P2S is a small utility program to convert formats from plink to sumstat and vice versa.The plink program uses the LINKAGE input format, which is a widely used format in genetic linkage and association analysis. The sumstat suite of programs has been developed using a different input format. Specifically, it lists each SNP on a separate input line (row) rather than an input column.

::DEVELOPER

Jurg Ott, Ph.D.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 P2S

:: MORE INFORMATION

prob2plink 0.01 – Converts MaCH prob+info output to PLINK dosage file

prob2plink 0.01

:: DESCRIPTION

the prob2plink program converts MaCH output (prob+info) into plink dosage file.

::DEVELOPER

Yun Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • Perl
:: DOWNLOAD

  prob2plink

:: MORE INFORMATION