ExpressYourself – Microarray Data Processing Platform

ExpressYourself

:: DESCRIPTION

ExpressYourself is an interactive platform for background correction, normalization, scoring, and quality assessment of raw microarray data.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  •  web serve
  • Perl

:: DOWNLOAD

 ExpressYourself

:: MORE INFORMATION

Citation:

NM Luscombe, TE Royce, P Bertone, N Echols, CE Horak, JT Chang, M Snyder, M Gerstein (2003).
ExpressYourself: A modular platform for processing and visualizing microarray data.
Nucleic Acids Res 31:3477-82.

Cell Illustrator 5.0 – Platform for Systems Biology

Cell Illustrator 5.0

:: DESCRIPTION

Cell Illustrator is a software tool that enables biologists to draw, model, elucidate and simulate complex biological processes and systems. It has outstanding drawing capabilities, moreover it allows researchers to model metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities such as genomic DNA, mRNA and proteins.

DEVELOPER

Human Genome Center, Institute of Medical Science, The University of Tokyo

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac / Linux
  • Java

:: DOWNLOAD

 Cell Illustrator

:: MORE INFORMATION

Citation

Nagasaki M, Saito A, Jeong E, Li C, Kojima K, Ikeda E, Miyano S,
Cell Illustrator 4.0: A computational platform for systems biology,
In Silico Biol, 2010; 10:0002

ISYS 1.35 – Platform for Integrating Heterogeneous Bioinformatic Resources

ISYS 1.35

:: DESCRIPTION

ISYS (Integrated SYStem) is a Java-based plugin framework for loosely-coupled integration of independently developed components. It provides both service-oriented and event-based communication whose semantics may be contributed by component developers.

::DEVELOPER

Andrew Farmer

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • java

:: DOWNLOAD

ISYS

:: MORE INFORMATION

Citation

Siepel A, Farmer A, Tolopko A, Zhuang M, Mendes P, Beavis W, Sobral B.
ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources.
Bioinformatics. 2001 Jan;17(1):83–94