pGenN – Gene Normalization Tool for Plant Genes and Proteins in Scientific Literature

pGenN

:: DESCRIPTION

pGenN is a system specifically designed for plant gene normalization. This pGenN website enables user search gene normalization information by keywords, a list of PMIDs, or UniProt ACs in the database. The results (Gene names and corresponding UniProt ACs) are displayed in sortable tables with text evidence and downloadable for further research.

::DEVELOPER

BioNLP and Text Mining Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

pGenN, a Gene Normalization Tool for Plant Genes and Proteins in Scientific Literature.
Ding R, Arighi CN, Lee JY, Wu CH, Vijay-Shanker K.
PLoS One. 2015 Aug 10;10(8):e0135305. doi: 10.1371/journal.pone.0135305.

PlantPAN 2.0 – Identifying Combinatorial Cis-regulatory Elements with Distance Constraint in Plant Gene Groups

PlantPAN 2.0

:: DESCRIPTION

PlantPAN (Plant Promoter Analysis Navigator) is a database-assisted system for recognizing combinatorial cis-regulatory elements with distance constraint in plant co-expressed genes.

::DEVELOPER

Integrative System Biology Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants.
Chow CN, Zheng HQ, Wu NY, Chien CH, Huang HD, Lee TY, Chiang-Hsieh YF, Hou PF, Yang TY, Chang WC.
Nucleic Acids Res. 2015 Oct 17. pii: gkv1035.

BMC Genomics. 2008 Nov 26;9:561. doi: 10.1186/1471-2164-9-561.
PlantPAN: Plant promoter analysis navigator, for identifying combinatorial cis-regulatory elements with distance constraint in plant gene groups.
Chang WC, Lee TY, Huang HD, Huang HY, Pan RL.