PLACNET 1.04 / PLACNETw – Plasmid Constellation Network project

PLACNET 1.04 / PLACNETw

:: DESCRIPTION

PLACNET is a graph-based tool for reconstruction of plasmids from next generation sequence pair-end datasets.

PLACNETw, a web tool based on PLACNET, provides an interactive graphic interface, automates BLAST searches, and extracts the relevant information for decision making.

:: DEVELOPER

irycis Bioinfo

:: REQUIREMENTS

  • Linux / Window
  • Python

:: DOWNLOAD

PLACNET / PLACNETw

:: MORE INFORMATION

Citation

Lanza VF, de Toro M, Garcillán-Barcia MP, Mora A, Blanco J, Coque TM, de la Cruz F.
Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences.
PLoS Genet. 2014 Dec 18;10(12):e1004766. doi: 10.1371/journal.pgen.1004766. PMID: 25522143; PMCID: PMC4270462.

Vielva L, de Toro M, Lanza VF, de la Cruz F.
PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes.
Bioinformatics. 2017 Dec 1;33(23):3796-3798. doi: 10.1093/bioinformatics/btx462. PMID: 29036591.

Exit mobile version