PiGx v0.0.3 – Pipelines in Genomics

PiGx v0.0.3

:: DESCRIPTION

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

::DEVELOPER

Bioinformatics & Omics Data Science platform

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

PiGx

:: MORE INFORMATION

Citation

Wurmus R, Uyar B, Osberg B, Franke V, Gosdschan A, Wreczycka K, Ronen J, Akalin A.
PiGx: reproducible genomics analysis pipelines with GNU Guix.
Gigascience. 2018 Dec 1;7(12):giy123. doi: 10.1093/gigascience/giy123. PMID: 30277498; PMCID: PMC6275446.

Nozzle 1.1-1 – Generation of Reports in High-throughput data analysis pipelines

Nozzle 1.1-1

:: DESCRIPTION

Nozzle is an R package for generation of reports in high-throughput data analysis pipelines.

::DEVELOPER

Peter Park’s lab at CBMI, Harvard Medical School

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows / MacOsX
R

:: DOWNLOAD

Nozzle

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Apr 15;29(8):1089-91. doi: 10.1093/bioinformatics/btt085. Epub 2013 Feb 17.
Nozzle: a report generation toolkit for data analysis pipelines.
Gehlenborg N1, Noble MS, Getz G, Chin L, Park PJ.

Bpipe 0.9.10 – A Tool for Running and Managing Bioinformatics Pipelines

Bpipe 0.9.10

:: DESCRIPTION

Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages – known as ‘pipelines’.

::DEVELOPER

Bpipe team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

Bpipe

:: MORE INFORMATION

Citation:

Bpipe: a tool for running and managing bioinformatics pipelines.
Sadedin SP, Pope B, Oshlack A.
Bioinformatics. 2012 Jun 1;28(11):1525-6. doi: 10.1093/bioinformatics/bts167.