PINCAGE is a method that uses probabilistic integration of cancer genomics data for combined evaluation of RNA-seq gene expression and 450K array DNA methylation measurements of promoters as well as gene bodies.
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PINCAGE: Probabilistic integration of cancer genomics data for perturbed gene identification and sample classification.
Świtnicki MP, Juul M, Madsen T, Sørensen KD, Pedersen JS.
Bioinformatics. 2016 Jan 6. pii: btv758.