Tag: PIN

MyProteinNet 2 – Build Up-to-date PIN for Organisms, Tissues, Cells Subsets and user-defined contexts

MyProteinNet 2

:: DESCRIPTION

The MyProteinNet web server allows users to eas- ily create such context-sensitive protein interaction networks. Users can automatically gather and con- solidate data from up to 11 different databases to create a generic protein interaction network (inter- actome).

::DEVELOPER

Yeger-Lotem Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Basha O, Flom D, Barshir R, Smoly I, Tirman S, Yeger-Lotem E.
MyProteinNet: build up-to-date protein interaction networks for organisms, tissues and user-defined contexts.
Nucleic Acids Res. 2015 Jul 1;43(W1):W258-63. doi: 10.1093/nar/gkv515. Epub 2015 May 18. PMID: 25990735; PMCID: PMC4489290.

XlinkCyNET 1.4.3 – Generate Residue-to-residue connections provided by XL-MS in PIN

XlinkCyNET 1.4.3

:: DESCRIPTION

XlinkCyNET is an open-source Java plugin that generates residue-to-residue connections provided by XL-MS in protein interaction networks. It provides an interactive interface for the exploration of cross-links and offers various options to display protein domains.

::DEVELOPER

The Liu Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / MacOsX  /Windows
  • Java
  • Cytoscape

:: DOWNLOAD

XlinkCyNET

:: MORE INFORMATION

Citation:

Lima DB, Zhu Y, Liu F.
XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
J Proteome Res. 2021 Apr 2;20(4):1943-1950. doi: 10.1021/acs.jproteome.0c00957. Epub 2021 Mar 9. PMID: 33689356.