morePhyML 1.14 – Improving ML tree searching with PhyML 3

morePhyML 1.14

:: DESCRIPTION

morePhyML has been implemented to improve ML tree space exploration with PhyML. morePhyML allows inferring more accurate phylogenetic trees than several other recently developed ML tree inference softwares in many cases.

::DEVELOPER

Alexis Criscuolo (alexis.criscuolo@pasteur.fr)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

morePhyML

:: MORE INFORMATION

Citation:

Criscuolo A. (2011)
morePhyML: improving the phylogenetic tree space exploration with PhyML 3.
Mol Phylogenet Evol. 61(3):944-8.

MrAIC 1.4.6 / pMrAIC 1.1 – Perl script for selecting DNA substitution models using PHYML

MrAIC 1.4.6 / pMrAIC 1.1

:: DESCRIPTION

MrAIC.pl is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML

pMrAIC is the version of MrAIC runs parallel instances of PHYML

::DEVELOPER

Johan Nylander

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux/ MacOsX
PHYML
Perl

:: DOWNLOAD

MrAIC , pMrAIC

:: MORE INFORMATION

PhyML 2020 – Phylogeny software based on the Maximum Likelihood

PhyML 2020

:: DESCRIPTION

PhyML (Phylogenetic estimation using Maximum Likelihood) is a phylogeny software based on the maximum-likelihood principle. Early PhyML versions used a fast algorithm to perform Nearest Neighbor Interchanges (NNIs), in order to improve a reasonable starting tree topology.

PhyML Online Version

::DEVELOPER

Stéphane Guindon , Olivier Gascuel

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / MacOsX / Linux

:: DOWNLOAD

PhyML

:: MORE INFORMATION

Citation:

Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O.
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Systematic Biology, 59(3):307-21, 2010.