iTree 2

:: DESCRIPTION

iTree is  an open-source phylogenomic pipeline, which automates the execution of phylogenetic analyses under multithreaded and grid-computing environments, providing a scalable high-throughput platform for performing genome-wide evolutionary analyses. Furthermore, we describe the results of two applications of using iTree: (1) taxonomic assignment of 16S ribosomal RNA sequences from human oral metagenomic samples and (2) detection of horizontal gene transfer in microbial genomes.

::DEVELOPER

Ahmed Moustafa

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Windows/ Linux / Mac OsX
• Perl
• MySQL

:: DOWNLOAD

 iTree

:: MORE INFORMATION

Citation:

Moustafa, A.; Bhattacharya, D.; Allen, A.E.;
iTree: A high-throughput phylogenomic pipeline
Biomedical Engineering Conference (CIBEC), 2010 5th Cairo International