:: DESCRIPTION
TreeEdit is an easy to use application for organizing, viewing and manipulating sets of phylogenetic trees. TreeEdit is intended as a tool for preparing sets of trees for use in phylogenetics packages such as PAUP.
::DEVELOPER
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
ProfDist is a user-friendly software package using the profile-neighbor-joining method (PNJ) in inferring phylogenies based on profile distances on DNA or RNA sequences. It is a tool for reconstructing and visualizing large phylogenetic trees providing new and standard features with a special focus on time efficency, robustness and accuracy.
::DEVELOPER
Matthias Wolf, Benjamin Ruderisch, Thomas Dandekar, Jörg Schultz, and Tobias Müller Department of Bioinformatics, University Würzburg
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Friedrich J, Dandekar T, Wolf M and Müller T (2005):
ProfDist: A tool for the construction of large phylogenetic trees based on profile distances.
Bioinformatics 21: 2108-2109
:: DESCRIPTION
T-REX (tree and reticulogram reconstruction) is an application to reconstruct phylogenetic trees and reticulation networks from distance matrices. The application includes a number of tree fitting methods like NJ, UNJ or ADDTREE which have been very popular in phylogenetic analysis. At the same time, the software comprises several new methods of phylogenetic analysis such as: tree reconstruction using weights, tree inference from incomplete distance matrices or modeling a reticulation network for a collection of objects or species. T-REX also allows the user to visualize obtained tree or network structures using Hierarchical, Radial or Axial types of tree drawing and manipulate them interactively.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Makarenkov, V. 2001.
T-Rex: Reconstructing and visualizing phylogenetic trees and reticulation networks,
Bioinformatics 17, 664-668.
:: DESCRIPTION
TreeViewJ is an open source, cross-platform tool for viewing and analyzing phylogenetic trees. It provides the user with the capability to rename, color, and adjust the width of nodes and branches to produce publication-quality images. If dates are available for taxa, the software can map them onto a timeline, and sort the tree in ascending or descending date order.
::DEVELOPER
Matthew W Peterson and Marc E Colosimo
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Peterson, M.W. and M.E. Colosimo,
TreeViewJ: an application for viewing and analyzing phylogenetic trees.
Source Code Biol Med, 2007. 2(1): p. 7.
:: DESCRIPTION
TreeViewX is an open source program to display phylogenetic trees.
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Phylodendron is a java software for drawing phylogenetic trees. Phylodendron is an application for drawing phylogenetic trees, used in evolutionary biology. It will read tree data in New Hampshire (Newick) format, then display graphical views of the phylogenetic tree. Various options allow you to modify, adorn and edit the tree. Standard application functions to save, print, edit and manage preferences are included. This program will not estimate nor produce the tree data. For that, software such as Phylip, Clustal W, and others may be used.
::DEVELOPER
Don Gilbert at Indiana University
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:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
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