SPACoDi 0.1 / spacodiR 0.13.0115 – Structuring of Phylogenetic Diversity

SPACoDi 0.1 / spacodiR 0.13.0115

:: DESCRIPTION

SPACoDi (Spatial & Phylogenetic Analysis of Community Diversity) is primarily designed to characterise the structure of communities using inventory data in the form of a presence/absence or abundance species-plot matrix. The structure can be interpreted according to the spatial position of plots (subcommunities) and/or according to the phylogenetic or functional relationships between species (community phylogenetic structure)

spacodiR is a R package of SPACoDi.

::DEVELOPER

Olivier Hardy @ Evolutionary Biology & Ecology, Université Libre de Bruxelles

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 SPACoDi  , spacodiR

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Sep 1;27(17):2437-8. Epub 2011 Jul 6.
spacodiR: structuring of phylogenetic diversity in ecological communities.
Eastman JM, Paine CE, Hardy OJ.

PDA 1.0.3 – Phylogenetic Diversity Analyzer

PDA 1.0.3

:: DESCRIPTION

PDA (Phylogenetic Diversity Algorithm)  is a software tool to analyze various aspects of PD and PD-related measures based on both phylogenetic trees and networks

::DEVELOPER

 the Center of Integrative Bioinformatics Vienna (CIBIV) headed by Arndt von Haeseler.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX

:: DOWNLOAD

 PDA

:: MORE INFORMATION

Citation:

Split diversity in constrained conservation prioritization using integer linear programming.
Chernomor O, Minh BQ, Forest F, Klaere S, Ingram T, Henzinger M, von Haeseler A.
Methods Ecol Evol. 2015 Jan;6(1):83-91.