rRNA phylogeny
:: DESCRIPTION
rRNA phylogeny is a program package to phylogenetic analyses (using Phylip) of rRNA using a matrix of empirical substitution rates and the OTRNA model.
4to20 translates DNA/RNA sequences to rRNA-coded sequences in 20-letter code
20to4 translates rRNA-coded sequences to 4-letter code
nadist performs Distance analysis using the OTRNA model and gamma-distributed rates.
rRNAdist, rRNAml, rnaml: modified versions of protdist, protml, protmlk from PHYLIP to use the rRNA matrices.
etseqgen: modification of PSeq-gen to use the PMB model or the Bacterial SSU rRNA model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows / Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Empirical substitution models for Ribosomal RNA
Andrew Smith, Thomas W. H. Lui and Elisabeth R. M. Tillier,
Mol Biol Evol (2004) 21: 419-427
High apparent rate of simultaneous compensatory base-pair substitutions in ribosomal RNA
Tillier, E. R. M. and R. A. Collins,
Genetics (1998) 148: 1993-2002