Tag: PHAST

PHAST 1.5 / RPHAST 1.6.9 – Phylogenetic Analysis with Space/Time Models / for R

PHAST 1.5 / RPHAST 1.6.9

:: DESCRIPTION

PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about half a dozen major programs, plus more than a dozen utilities for manipulating sequence alignments, phylogenetic trees, and genomic annotations.

RPHAST: Phylogenetic Analysis with Space/Time Models… in R

::DEVELOPER

Siepel Lab, Pollard Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R

:: DOWNLOAD

 PHAST / RPHAST 

 :: MORE INFORMATION

Citation

Brief Bioinform. 2011 Jan;12(1):41-51. doi: 10.1093/bib/bbq072. Epub 2010 Dec 21.
PHAST and RPHAST: phylogenetic analysis with space/time models.
Hubisz MJ1, Pollard KS, Siepel A.

PHAST 20161213 / PHASTER – Fast Phage Search tool

PHAST 20161213 / PHASTER

:: DESCRIPTION

PHAST (PHAge Search Tool) is a web server designed to rapidly and accurately identify, annotate and graphically display prophage sequences within bacterial genomes or plasmids.

PHASTER (PHAge Search Tool Enhanced Release) is a significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and plasmids,.

::DEVELOPER

the Wishart Research Group, University of Alberta

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

PHASTER: a better, faster version of the PHAST phage search tool.
Arndt D, Grant JR, Marcu A, Sajed T, Pon A, Liang Y, Wishart DS.
Nucleic Acids Res. 2016 May 3. pii: gkw387.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52. doi: 10.1093/nar/gkr485. Epub 2011 Jun 14.
PHAST: a fast phage search tool.
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS.