UTGB Toolkit 1.5.8 – Personalized Genome Browser

UTGB Toolkit 1.5.8

:: DESCRIPTION

UTGB Toolkit (University of Tokyo Genome Browser)  is an open-source software for developing personalized genome browsers that work in web browsers.

::DEVELOPER

Morishita Laboratory

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Java 

:: DOWNLOAD

 UTGB Toolkit

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Aug 1;25(15):1856-61. Epub 2009 Jun 3.
UTGB toolkit for personalized genome browsers.
Saito TL, Yoshimura J, Sasaki S, Ahsan B, Sasaki A, Kuroshu R, Morishita S.

 

HitWalker2 1.0 – Variant Prioritization for Personalized Functional Cancer Genomics

HitWalker2 1.0

:: DESCRIPTION

HitWalker prioritizes patient variants relative to their weighted proximity to functional assay results in a protein-protein interaction network. It is highly extensible, allowing incorporation of diverse data types to refine prioritization.

HitWalker2 is highly flexible and can utilize many data types and prioritization methods based upon available data and desired questions, allowing it to be utilized in a diverse range of studies such as cancer, infectious disease and psychiatric disorders.

::DEVELOPER

McWeeney Research Group

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • R Package

:: DOWNLOAD

 HitWalker2

:: MORE INFORMATION

Citation

HitWalker2: Visual analytics for precision medicine and beyond.
Bottomly D, McWeeney SK, Wilmot B.
Bioinformatics. 2015 Dec 26. pii: btv739

Bioinformatics. 2013 Feb 15;29(4):509-10. doi: 10.1093/bioinformatics/btt003. Epub 2013 Jan 9.
HitWalker: variant prioritization for personalized functional cancer genomics.
Bottomly D, Wilmot B, Tyner JW, Eide CA, Loriaux MM, Druker BJ, McWeeney SK.