TRhist 1.0.1 – Tandem Repeat Profiler in Personal Genomes

TRhist 1.0.1

:: DESCRIPTION

TRhist is a tool for finding significat tandem repeats using short reads.

::DEVELOPER

Morishita Laboratory, the University of Tokyo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

TRhist

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Mar 15;30(6):815-22. doi: 10.1093/bioinformatics/btt647. Epub 2013 Nov 8.
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.
Doi K1, Monjo T, Hoang PH, Yoshimura J, Yurino H, Mitsui J, Ishiura H, Takahashi Y, Ichikawa Y, Goto J, Tsuji S, Morishita S.

:: DESCRIPTION

The PGB is developed to provide comprehensive functional annotation and visualization for individual genomes

::DEVELOPER

PGB team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

PGB

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W192-7. doi: 10.1093/nar/gku361. Epub 2014 May 5.
The personal genome browser: visualizing functions of genetic variants.
Juan L, Teng M, Zang T, Hao Y, Wang Z, Yan C, Liu Y, Li J, Zhang T, Wang Y2.

:: DESCRIPTION

lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.

::DEVELOPER

Gymrek Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

LobSTR

:: MORE INFORMATION

Citation

lobSTR: A short tandem repeat profiler for personal genomes.
Gymrek M, Golan D, Rosset S, Erlich Y.
Genome Res. 2012 Jun;22(6):1154-62. doi: 10.1101/gr.135780.111.