Tag: Perl module

TFBS 0.7.1 – Perl modules for Transcription Factor Binding Site Detection and Analysis

TFBS 0.7.1

:: DESCRIPTION

TFBS is a set of integrated, object-oriented Perl modules for transcription factor binding site detection and analysis. It implements objects representing specificity profile matrices, binding sites and sets thereof, pattern generators, and pattern database interfaces.

::DEVELOPER

Computational Regulatory Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 TFBS

:: MORE INFORMATION

Citation:

Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136

SeqToolBox 0.02 – A set of Perl modules and scripts for Operations on Sequence data

SeqToolBox 0.02

:: DESCRIPTION

SeqToolBox is a set of Perl modules and scripts for day to day operations on sequence data. Includes, parsers for standard file formats and some utility modules, such as modules for working with “sets”, a set of modules for handling NCBI taxonomy database etc. The bin directory contains some scripts to run jobs on clusters.

::DEVELOPER

Malay K Basu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

  SeqToolBox

:: MORE INFORMATION