SIM 0.9.4.9
:: DESCRIPTION
SIM (Spectrum Identification Machine) is a Peptide Spectrum Match – PSM search tool that capitalizes on the high intensity b1 fragment ion of tandem mass spectra of peptides coupled in solution with Phenylisotiocyanate – PITC to confidently sequence the first amino acid and ultimately reduce the search space. This tool enables to make a search with sample without PITC labeling too.
::DEVELOPER
Laboratory for Proteomics and Protein Engineering
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows
- .NET Framework 4.5
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 May 15;29(10):1343-4. doi: 10.1093/bioinformatics/btt106. Epub 2013 Feb 27.
Effectively addressing complex proteomic search spaces with peptide spectrum matching.
Borges D1, Perez-Riverol Y, Nogueira FC, Domont GB, Noda J, da Veiga Leprevost F, Besada V, Fran?a FM, Barbosa VC, Sánchez A, Carvalho PC.