Tag: PDF

SBML2TikZ – Converts SBML files to graphical form in LaTeX and PDF using PGF/TikZ

SBML2TikZ

:: DESCRIPTION

SBML2TikZ provides automatic generation of PGF/TikZ TeX Macros to illustrate SBML graphs. The rendering is dependent on the SBML Render Extension proposed by Gauges et al. and the rendering library is built on the existing SBML Layout Library.

::DEVELOPER

SBML2TikZ team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX

:: DOWNLOAD

 SBML2TikZ

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Nov 1;26(21):2794-5. doi: 10.1093/bioinformatics/btq512. Epub 2010 Sep 9.
SBML2TikZ: supporting the SBML render extension in LaTeX.
Shen SY1, Bergmann F, Sauro HM.

OnTheFly 2.0 Beta – Automated Annotation of Biochemical Terms in PDF, Text and Microsoft Office documents

OnTheFly 2.0 Beta

:: DESCRIPTION

OnTheFly is a web-based tool capable of annotating genes proteins and chemicals in commonly used document formats such as PDF, Microsoft Word and Excel, comma-separated values, and plain text files.

::DEVELOPER

Schneider (Reinhard) Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser
  • Java

:: DOWNLOAD

 No

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Apr 1;25(7):977-8. Epub 2009 Feb 17.
OnTheFly: a tool for automated document-based text annotation, data linking and network generation.
Pavlopoulos GA, Pafilis E, Kuhn M, Hooper SD, Schneider R.