:: DESCRIPTION
BioPAX-pattern is an open source and extensible framework for defining and searching graph patterns in BioPAX models.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Jan 1;30(1):139-40. doi: 10.1093/bioinformatics/btt539. Epub 2013 Sep 16.
Pattern search in BioPAX models.
Babur Ö , Aksoy BA, Rodchenkov I, Sümer SO, Sander C, Demir E.
:: DESCRIPTION
DASS-GUI is a stand-alone program written in C++ that calculates all significant closed sets* of a given dataset containing the host sets. Some of the used algorithms are taken from Hollunder et al. (2007). DASS-GUI also allows additional analyses of the identified closed sets: filtering, handling of synonymous names, enrichment analyses, calculation of means and standard deviations of different numerical features, extraction of the underlying closed set hierarchy and corresponding export as GML file, as well as comparison (validation) with pre-defined sets.
::DEVELOPER
J.Hollunder and T.Wilhelm
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Hollunder, J., * Friedel, M., Kuiper, M., Wilhelm, T. (2010)
DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data.
Bioinformatics 26(7), 987-9.
