Tag: Pathway Visualization

VISIBIOweb 1.1 – pathway visualization software for BioPAX

VISIBIOweb 1.1

:: DESCRIPTION

VISIBIOweb is a free, open-source, web-based pathway visualization and layout services software for BioPAX (level 2) pathway models

::DEVELOPER

Bilkent Center for Bioinformatics

:: SCREENSHOTS

 VISIBIOweb

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 VISIBIOweb

 :: MORE INFORMATION

Citation

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W150-4. doi: 10.1093/nar/gkq352. Epub 2010 May 11.
VISIBIOweb: visualization and layout services for BioPAX pathway models.
Dilek A1, Belviranli ME, Dogrusoz U.

PAICE 2.92 – Bioinformatics Pathway Visualization

PAICE 2.92

:: DESCRIPTION

PAICE (Pathway Analysis and Integrated Coloring of Experiments) is a rapid bioinformatics pathway visualization tool for KEGG-compatible accessions derived from Illumina Solexa next-gen and Affymetrix datasets. It colors KEGG pathways while appreciating detection-calls and duplicate gene copies.

::DEVELOPER

Parsa Hosseini

:: SCREENSHOTS

PAICE

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Python

:: DOWNLOAD

 PAICE

:: MORE INFORMATION

Citation

Bioinformation. 2012;8(6):287-9. doi: 10.6026/97320630008287. Epub 2012 Mar 31.
MAPT and PAICE: Tools for time series and single time point transcriptionist visualization and knowledge discovery.
Hosseini P, Tremblay A, Matthews BF, Alkharouf NW.