:: DESCRIPTION
Phoenix converts EMBL flat files into some suitable XML format and then read the resulting XML files using whatever XML parser is available in your language.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Thermo MSF Parser is a Java library to parse and visualize these msf files. The Thermo ProteomeDiscoverer program is a proteomics tool that integrates both the peptide identification and quantification steps in peptide centric proteomics into a single workflow. This makes it one of the preferred programs to analyse proteomics data, coming from Thermo mass spectrometers, in a rapid and consistent manner. The results of the ProteomeDiscoverer workflow program are stored in msf files. Here,
::DEVELOPER
Computational Omics and Systems Biology Group
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Niklaas Colaert et al.
thermo-msf-parser: An Open Source Java Library to Parse and Visualize Thermo Proteome Discoverer msf Files
J. Proteome Res., 2011, 10 (8), pp 3840–3843
:: DESCRIPTION
mzR provides a unified API to the common file formats and parsers available for mass spectrometry data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
XTandem Parser is a Java project for extracting information from X!Tandem output xml files.
::DEVELOPER
The Proteomics Unit at the University of Bergen (PROBE)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Proteomics. 2010 Apr;10(7):1522-4.
XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A.
:: DESCRIPTION
OMSSA Parser is a Java based parser for OMSSA (Open Mass Spectrometry Search Algorithm) omx files.
::DEVELOPER
The Proteomics Unit at the University of Bergen (PROBE)
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Proteomics. 2009 Jul;9(14):3772-4.
OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results.
Barsnes H, Huber S, Sickmann A, Eidhammer I, Martens L.
:: DESCRIPTION
txgen generates a script for PAUP*, to calculate MP or ML tree scores on a sliding window of nucleotide data given an input tree. The program also parses PAUP*’s log file into a table that can be used in your favourite spreadsheet.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
