sPARTA 1.27 – small RNA-PARE Target Analyzer

sPARTA 1.27

:: DESCRIPTION

sPARTA is a high performance software for the validation of plant miRNA or sRNA targets with PARE (Parallel Analysis of Read Ends) data.

::DEVELOPER

Atul Kakrana

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

sPARTA

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 Oct;42(18):e139. doi: 10.1093/nar/gku693. Epub 2014 Aug 12.
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software.
Kakrana A, Hammond R, Patel P, Nakano M, Meyers BC

comPARE – PARE Validated miRNA Targets

comPARE

:: DESCRIPTION

comPARE is a web resource for plant miRNA target analysis.

::DEVELOPER

the Meyers lab at the University of Delaware.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

PARE – Compare Protein Abundance and mRNA Expression data

PARE

:: DESCRIPTION

PARE (Protein Abundance and mRNA Expression) is a tool for comparing protein abundance and mRNA expression data. In addition to globally comparing the quantities of protein and mRNA, PARE allows users to select subsets of proteins for focused study (based on functional categories and complexes). Furthermore, it highlights correlation outliers, which are potentially worth further examination.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

PARE

:: MORE INFORMATION

Citation:

EZ Yu, AE Burba, M Gerstein (2007)
PARE: a tool for comparing protein abundance and mRNA expression data.
BMC Bioinformatics 8: 309.