ParaTree – Parametric Alignment of Trees

ParaTree

:: DESCRIPTION

ParaTree is a parametric tool for aligning two ordered trees. There are two versoins depending on whether gap penalty is considered.

::DEVELOPER

Lusheng Wang

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows /Linux/MacOsX
  • Java

:: DOWNLOAD

 ParaTree

:: MORE INFORMATION

Citation

Bioinformatics. 2003 Nov 22;19(17):2237-45.
Parametric alignment of ordered trees.
Wang L, Zhao J.

ParaRNA 1.0 – Computing Parametric Alignment of Two RNA Structures

ParaRNA 1.0

:: DESCRIPTION

ParaRNAis a software for computing parametric alignment of two RNA structures. It takes two RNA secondary structures and match score, indel score, the range of mismatch score and the range of gap score as its input, and computes all the optimal alignments in the parametric space given by mismatch score and gap score, and show them in a graphic interface.

::DEVELOPER

Lusheng Wang

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 ParaRNA

:: MORE INFORMATION