Panache v1.0.0 – PANgenome Analyzer with CHromosomal Exploration

Panache v1.0.0

:: DESCRIPTION

Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.

::DEVELOPER

iDNA-ABT team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser
:: DOWNLOAD

NO

:: MORE INFORMATION

Citation

Durant É, Sabot F, Conte M, Rouard M.
Panache: a Web Browser-Based Viewer for Linearized Pangenomes.
Bioinformatics. 2021 Oct 2:btab688. doi: 10.1093/bioinformatics/btab688. Epub ahead of print. PMID: 34601567.

PATO v1.0.2 – Pangenome Analysis Toolkit

PATO v1.0.2

:: DESCRIPTION

PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species. It allows to analyze the core-genome, accessory genome and whole genome, the population structure, and the horizontal gene transfer dynamics.

:: DEVELOPER

irycis Bioinfo

:: REQUIREMENTS

  • Linux / Window
  • R

:: DOWNLOAD

PATO

:: MORE INFORMATION

Citation

Fernández-de-Bobadilla MD, Talavera-Rodríguez A, Chacón L, Baquero F, Coque TM, Lanza VF.
PATO: Pangenome Analysis Toolkit.
Bioinformatics. 2021 Oct 8:btab697. doi: 10.1093/bioinformatics/btab697. Epub ahead of print. PMID: 34623430.

PanFP – Pangenome-based Functional Profiles for Microbial Communities

PanFP

:: DESCRIPTION

The software called PanFP (Pangenome-based functional profile) is a tool to predict functional composition of microbial communities based on communities survey data which builds a pangenome for each OTU and assigns the pangenome’s functional profile to the OTU.

::DEVELOPER

Se-Ran Jun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Perl

:: DOWNLOAD

 PanFP

:: MORE INFORMATION

Citation

PanFP: pangenome-based functional profiles for microbial communities.
Jun SR, Robeson MS, Hauser LJ, Schadt CW, Gorin AA.
BMC Res Notes. 2015 Sep 26;8(1):479.