:: DESCRIPTION
PANDA (Propagation of Affinity and Domain Architecture) is a web server to predict protein functions in the format of Gene Ontology (GO) terms.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Wang Z, Zhao C, Wang Y, Sun Z, Wang N.
PANDA: Protein function prediction using domain architecture and affinity propagation.
Sci Rep. 2018 Feb 22;8(1):3484. doi: 10.1038/s41598-018-21849-1. PMID: 29472600; PMCID: PMC5823857.
:: DESCRIPTION
The PANDA (Pathway AND Annotation) Explorer: a data visualization tool capable of annotating genes with any data type and graphically displaying the result within the context of pathways.
::DEVELOPER
Bioinformatics Program, Division of Biomedical Statistics and Informatics, Mayo Clinic Research
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data.
Hart SN, Moore RM, Zimmermann MT, Oliver GR, Egan JB, Bryce AH, Kocher JP.
PeerJ. 2015 May 19;3:e970. doi: 10.7717/peerj.970.
:: DESCRIPTION
PANDA is a message-passing model using multiple sources of information to predict regulatory relationships, and used it to integrate protein-protein interaction, gene expression, and sequence motif data to reconstruct genome-wide, condition-specific regulatory networks in yeast.
PandaR is an alternate implementation of PANDA in R
PyPanda is a python implementation of PANDA
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
PLoS One. 2013 May 31;8(5):e64832. doi: 10.1371/journal.pone.0064832. Print 2013.
Passing messages between biological networks to refine predicted interactions.
Glass K1, Huttenhower C, Quackenbush J, Yuan GC.
PyPanda: a Python package for gene regulatory network reconstruction.
van IJzendoorn DG, Glass K, Quackenbush J, Kuijjer ML.
Bioinformatics. 2016 Jul 10. pii: btw422.
:: DESCRIPTION
PAnDA is an algorithm for the prediction of direct and indirect TF binding events.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2015 Oct 30;43(19):e125. doi: 10.1093/nar/gkv607. Epub 2015 Jun 18.
By the company they keep: interaction networks define the binding ability of transcription factors.
Cirillo D, Botta-Orfila T, Tartaglia GG
