PPS – Find Palindromes in all Protein Sequences

PPS

:: DESCRIPTION

PPS (Palindromes in Protein Sequences) is a computing engine  identify palindrome and SAARs in the protein sequences available in various databases.

::DEVELOPER

PPS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformation. 2014 Jan 29;10(1):48-51. doi: 10.6026/97320630010048. eCollection 2014.
PPS: A computing engine to find Palindromes in all Protein sequences.
Ahmed Z, Gurusaran M, Narayana P, Kumar KS, Mohanapriya J, Vaishnavi MK, Sekar K.

findIR – Detection of Perfect Overlapping and Nested Inverted Repeats in DNA Sequences

findIR

:: DESCRIPTION

Palindrome (also known as findIR) is a MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences.

::DEVELOPER

Liang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX/Windows
  • MatLab

:: DOWNLOAD

 Palindrome

:: MORE INFORMATION

Citation

A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences.
Sreeskandarajan S, Flowers MM, Karro JE, Liang C.
Bioinformatics. 2013 Nov 30.

PalCheck – Online Multiple Palindrome Pattern Matching

PalCheck 1.2

:: DESCRIPTION

PalCheck is a java program that supports both online palindrome pattern matching and online multiple palindrome pattern matching.

::DEVELOPER

Theory of Computation Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Java

:: DOWNLOAD

 PalCheck

:: MORE INFORMATION

Citation

OMPPM: Online Multiple Palindrome Pattern Matching.
Kim H, Han YS.
Bioinformatics. 2015 Dec 16. pii: btv738.