JAligner 1.0 – Biological Local Pairwise Sequence Alignment

JAligner 1.0

:: DESCRIPTION

JAligner is an open source Java implementation of the Smith-Waterman algorithm with Gotoh’s improvement for biological local pairwise sequence alignment using the affine gap penalty model.

::DEVELOPER

Ahmed Moustafa 

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • JAVA

:: DOWNLOAD

 JAligner

:: MORE INFORMATION

Lalnview 3.0 – Graphical Viewer for Pairwise Sequence Alignments

Lalnview 3.0

:: DESCRIPTION

LalnView is a graphical program for visualizing local alignments between two sequences (protein or nucleic acids). Sequences are represented by colored rectangles to give an overall picture of the similarities between the two sequences. Blocks of similarity between the two sequences are colored according to the degree of identity between segments.

::DEVELOPER

Lauret Duret and Jean-Francois Gout.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX

:: DOWNLOAD

 Lalnview

:: MORE INFORMATION

Citation

Duret, L., Gasteiger, E. and Perrière, G. (1996)
LalnView: a graphical viewer for pairwise sequence alignments.
Comput. Applic. Biosci., 12, 507-510

ALION 1.0 – Pairwise Sequence Alignment

ALION 1.0

:: DESCRIPTION

ALION is a sequence alignment tool. Aligns two protein sequences using Needleman-Wunsch global alignment or Smith-Waterman local alignment methods with variable gap penalties and amino acid substitution matrices. Analogous to GCG GAP and BESTFIT programs.

::DEVELOPER

 The Brutlag Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Complier

:: DOWNLOAD

 ALION

:: MORE INFORMATION