COPE 1.2.5 – Pair-end Reads Connection tool to facilitate Genome Assembly

COPE 1.2.5

:: DESCRIPTION

COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research.

::DEVELOPER

COPE team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 COPE

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Nov 15;28(22):2870-4. doi: 10.1093/bioinformatics/bts563. Epub 2012 Oct 8.
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly.
Liu B, Yuan J, Yiu SM, Li Z, Xie Y, Chen Y, Shi Y, Zhang H, Li Y, Lam TW, Luo R.

PEAR 0.9.8 – Pair-End reads AssembleR

PEAR 0.9.8

:: DESCRIPTION

PEAR is an ultrafast, memory-efficient and highly accurate pair-end reads assembler. It is fully parallelized and can run with as low as just a few kilobytes of memory.

::DEVELOPER

The Exelixis Lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 PEAR

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Mar 1;30(5):614-20. doi: 10.1093/bioinformatics/btt5
PEAR: A fast and accurate Illumina Paired-End reAd mergeR.
Zhang J, Kobert K, Flouri T, Stamatakis A.