fuzzyClustering – K-partite Graph Clustering algorithm that allows for Overlapping (Fuzzy) Clusters

fuzzyClustering

:: DESCRIPTION

fuzzyClustering is a fast and efficient k-partite graph clustering algorithm that allows for overlapping (fuzzy) clusters. It is based on multiplicative update rules commonly used in non-negative matrix factorization.

::DEVELOPER

Institute of Computational Biology, German Research Center for Environmental Health (GmbH)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • MatLab

:: DOWNLOAD

 fuzzyClustering

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2010 Oct 20;11:522. doi: 10.1186/1471-2105-11-522.
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs.
Hartsperger ML, Blöchl F, Stümpflen V, Theis FJ.

findIR – Detection of Perfect Overlapping and Nested Inverted Repeats in DNA Sequences

findIR

:: DESCRIPTION

Palindrome (also known as findIR) is a MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences.

::DEVELOPER

Liang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX/Windows
  • MatLab

:: DOWNLOAD

 Palindrome

:: MORE INFORMATION

Citation

A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences.
Sreeskandarajan S, Flowers MM, Karro JE, Liang C.
Bioinformatics. 2013 Nov 30.