Auto-qPCR – Process Spreadsheet output directly from qPCR Thermocycler

Auto-qPCR

:: DESCRIPTION

Auto-qPCR is a python based web app designed to process raw data files from thermal cycler machines.

::DEVELOPER

Auto-qPCR team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

Auto-qPCR

:: MORE INFORMATION

Citation

Maussion G, Thomas RA, Demirova I, Gu G, Cai E, Chen CX, Abdian N, Strauss TJP, Kelaï S, Nauleau-Javaudin A, Beitel LK, Ramoz N, Gorwood P, Durcan TM.
Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data.
Sci Rep. 2021 Oct 29;11(1):21293. doi: 10.1038/s41598-021-99727-6. PMID: 34716395; PMCID: PMC8556264.

XTandem Parser 1.13.0 – Java based parser for X!Tandem output xml files

XTandem Parser 1.13.0

:: DESCRIPTION

XTandem Parser is a Java project for extracting information from X!Tandem output xml files.

::DEVELOPER

The Proteomics Unit at the University of Bergen (PROBE)

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/Linux
  • Java

:: DOWNLOAD

 XTandem Parser

:: MORE INFORMATION

Citation

Proteomics. 2010 Apr;10(7):1522-4.
XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A.

ESPript 3.0.8 / ENDscript 2.0.10 – Generate Pretty PostScript Output from Aligned Sequences

ESPript 3.0.8 / ENDscript 2.0.10

:: DESCRIPTION

ESPript (Easy Sequencing in Postscript) is a utility to generate a pretty PostScript output from aligned sequences.

ENDscript is an interface grouping eight types of Programs:  BLAST;  MULTALIN/  CLUSTALW;  DSSP;  CNS;  ESPript;  BOBSCRIPTMOLSCRIPT;  DINO;  PHYLODENDRON;  PROFIT.

::DEVELOPER

ESPript team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 ESPript/ ENDscript

:: MORE INFORMATION

Citation

Gouet, P., Courcelle, E., Stuart, D.I. and Metoz, F. (1999).
ESPript: analysis of multiple sequence alignments in PostScript
Bioinformatics. 15 305-8

Nucleic Acids Res. 2003 Jul 1;31(13):3320-3.
ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins.
Gouet P, Robert X, Courcelle E.

genio 1.0.12 – Genetics Input/Output Functions

genio 1.0.12

:: DESCRIPTION

The genio (GENetics I/O) package provides easy-to-use and efficient readers and writers for formats in genetics research.

::DEVELOPER

The Ochoa Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • R

:: DOWNLOAD

genio

:: MORE INFORMATION

SoupViewer 0.7.5.2 – Graphical Analysis tool for Output of RNAsoup program

SoupViewer 0.7.5.2

:: DESCRIPTION

SoupViewer was developed to give a more comfortable way of analyzing the big trees which come from RNAsoup.

::DEVELOPER

Bioinformatics Leipzig

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • Java

:: DOWNLOAD

 SoupViewer

:: MORE INFORMATION

prob2plink 0.01 – Converts MaCH prob+info output to PLINK dosage file

prob2plink 0.01

:: DESCRIPTION

the prob2plink program converts MaCH output (prob+info) into plink dosage file.

::DEVELOPER

Yun Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • Perl
:: DOWNLOAD

  prob2plink

:: MORE INFORMATION