MSClust 20130708 – Clustering 16S rRNA sequences into OTUs

MSClust 20130708

:: DESCRIPTION

MSClust (Multi-Seeds Based Clustering Algorithm) is an Matlab package for Clustering 16S rRNA sequences into OTUs.

::DEVELOPER

Zhao Hongyu’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

MSClust

:: MORE INFORMATION

Citation

J Microbiol Methods. 2013 Sep;94(3):347-55. doi: 10.1016/j.mimet.2013.07.004. Epub 2013 Jul 28.
MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence.
Chen W1, Cheng Y, Zhang C, Zhang S, Zhao H.

:: DESCRIPTION

PhylOTU identifies microbial operational taxonomic units (OTUs) from metagenomic data.

::DEVELOPER

Pollard Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

PhylOTU

:: MORE INFORMATION

Citation

PLoS Comput Biol. 2011 Jan 20;7(1):e1001061. doi: 10.1371/journal.pcbi.1001061.
PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data.
Sharpton TJ1, Riesenfeld SJ, Kembel SW, Ladau J, O’Dwyer JP, Green JL, Eisen JA, Pollard KS.