OrthoRBH 1.1 – Rapidly Identify Orthologous cDNA Sequences in related Species

OrthoRBH 1.1

:: DESCRIPTION

OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method.

::DEVELOPER

OrthoRBH team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 OrthoRBH

:: MORE INFORMATION

Citation:

Bioinformation. 2013;9(5):267-9. doi: 10.6026/97320630009267. Epub 2013 Mar 2.
OrthoRBH: A streamlined pipeline for mining large gene family sequences in related species.
Ziemann M1, Kamboj A, Bhave M.

OrthoVenn2 – Comparison and Annotation of Orthologous Gene Clusters among multiple Species

OrthoVenn2

:: DESCRIPTION

OrthoVenn2 is a web platform for comparison and annotation of orthologous gene clusters among multiple species.

::DEVELOPER

OrthoVenn team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Xu L, Dong Z, Fang L, Luo Y, Wei Z, Guo H, Zhang G, Gu YQ, Coleman-Derr D, Xia Q, Wang Y.
OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species.
Nucleic Acids Res. 2019 Jul 2;47(W1):W52-W58. doi: 10.1093/nar/gkz333. PMID: 31053848; PMCID: PMC6602458.

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species.
Wang Y, Coleman-Derr D, Chen G, Gu YQ.
Nucleic Acids Res. 2015 May 11. pii: gkv487.

PhosphOrtholog – Cross-species Mapping of Orthologous Protein Post-translational Modification

PhosphOrtholog

:: DESCRIPTION

PhosphOrtholog is a tool to map post-translational modification sites on proteins orthologous across species

::DEVELOPER

PhosphOrtholog team

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web server

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications.
Chaudhuri R, Sadrieh A, Hoffman NJ, Parker BL, Humphrey SJ, St?ckli J, Hill AP, James DE, Yang JY.
BMC Genomics. 2015 Aug 19;16(1):617. doi: 10.1186/s12864-015-1820-x.