Tag: oligonucleotides

OligoWiz 2.3.1 – Design oligonucleotides for DNA microarrays

OligoWiz 2.3.1

:: DESCRIPTION

OligoWiz performs intelligent design of oligonucleotides for DNA microarrays. It is implemented as a client-server solution, which consist of an easy to use Graphical User Interface (written in Java) which delegates the computationally intensive operations to a powerful Multi-CPU server hosted at the Center for Biological Sequence Analysis.

::DEVELOPER

DTU Health Tech

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / UNIX / MacOS X
  • Java

:: DOWNLOAD

OligoWiz Client

:: MORE INFORMATION

Citation

OligoWiz 2.0 – integrating sequence feature annotation into design of microarray probes
Rasmus Wernersson and Henrik Bjørn Nielsen.
Nucleic Acids Research, 2005, Vol. 33, Web Server issue W611-W615

Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays.
Henrik Bjørn Nielsen, Rasmus Wernersson and Steen Knudsen.
Nucleic Acids Research, 2003, Vol. 31, No. 13 3491-3496

xMAN 20060925 – MAp OligoNucleotides to Subject Genome

xMAN 20060925

:: DESCRIPTION

xMAN (extreme MApping of OligoNucleotides) is a simple and efficient method for the mapping of millions of query oligonucleotide fragments to the subject genome of any given length. xMAN is at least an order of magnitude faster than other popular existing tools.

::DEVELOPER

X. Shirley Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  xMAN

:: MORE INFORMATION

Citation:

Li W, Carroll JS, Brown M, Liu S.
xMAN: extreme MApping of OligoNucleotides.
BMC Genomics. 2008;9 Suppl 1:S20.