FoldNucleus – Calculation the Folding Nucleus for RNA or Protein

FoldNucleus

:: DESCRIPTION

FoldNucleus is a server to calculate the folding nucleus for RNA molecules with known 3D structures-including pseudoknots, tRNAs, hairpins, and ribozymes-and for protein molecules with known 3D structures, as long as they are smaller than 200 amino acid residues.

::DEVELOPER

FoldNucleus team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation:

Bioinformatics. 2015 Jun 22. pii: btv369.
FoldNucleus: Web server for the prediction of RNA and protein folding nuclei from their 3D structures.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV.

nucloc 1.06 – Analyzing Gene Positions in the Yeast Nucleus

nucloc 1.06

:: DESCRIPTION

nucloc is a set of computational tools designed to analyze gene positioning in yeast nuclei by automated processing of fluorescence microscopy images.

::DEVELOPER

Computational Imaging & Modeling Group, Institut Pasteur

:: SCREENSHOTS

:: REQUIREMENTS

Linux/Windows/MacOsX
Matlab

:: DOWNLOAD

nucloc

:: MORE INFORMATION

Citation:

Nat Methods. 2008 Dec;5(12):1031-7. doi: 10.1038/nmeth.1266. Epub 2008 Nov 2.
High-resolution statistical mapping reveals gene territories in live yeast.
Berger AB, Cabal GG, Fabre E, Duong T, Buc H, Nehrbass U, Olivo-Marin JC, Gadal O, Zimmer C.