Tag: Nucleosome-positioning

nuScore – DNA Deformation Energy and Nucleosome-positioning Score Calculator

nuScore

:: DESCRIPTION

nuScore allows estimation of the affinity of the histone core to DNA and prediction of nucleosome arrangement on a given sequence. The algorithm is based on assessment of the energy cost of imposing the deformations required to wrap DNA around the histone surface

::DEVELOPER

Peter Park’s lab at CBMI, Harvard Medical School

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Tolstorukov MY, Choudhary V, Olson WK, Zhurkin VB, Park PJ.
nuScore: a web-interface for nucleosome positioning predictions.
Bioinformatics. 2008. 24:1456-1458.

nucleR 2.24.0 – Non-parametric Nucleosome Positioning

nucleR 2.24.0

:: DESCRIPTION

nucleR is an R/Bioconductor package for a flexible and fast recognition of nucleosome positioning from next generation sequencing and tiling arrays experiments.

::DEVELOPER

Molecular Modeling and Bioinformatics Unit , IRB Barcelona

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • R
  • BioConductor

:: DOWNLOAD

 nucleR

:: MORE INFORMATION

Citation

Oscar Flores and Modesto Orozco (2011).
nucleR: a package for non-parametric nucleosome positioning.
Bioinformatics (2011) 27 (15): 2149-2150., doi:10.1093/bioinformatics/btr345