Tag: NUCleic acids

NAFlex – Analysis of Nucleic Acids Flexibility

NAFlex

:: DESCRIPTION

NAFlex is a web interface for the study of Nucleic Acids Flexibility.NAFlex allows the user to incorporate structures from the Protein Data Bank, filling gaps and removing structural inconsistencies if any. It also allows to build canonical (average or sequence-adapted) nucleic acid structures using a variety of predefined internal libraries and to create specific nucleic acids conformations.

::DEVELOPER

The Molecular Modeling and Bioinformatics (MMB) research group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W47-55. doi: 10.1093/nar/gkt378. Epub 2013 May 17.
NAFlex: a web server for the study of nucleic acid flexibility.
Hospital A1, Faustino I, Collepardo-Guevara R, González C, Gelpí JL, Orozco M.

KOSMOS 3.0 – Morph server for Nucleic Acids, Proteins and their Complexes

KOSMOS 3.0

:: DESCRIPTION

KOSMOS is the first web server to provide the structural biology community with both harmonic and anharmonic analyses of macromolecular structures including DNA, RNA, and Proteins.

::DEVELOPER

Material Strength & Computational Bioengineering Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 KOSMOS

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W531-6. doi: 10.1093/nar/gks525. Epub 2012 Jun 4.
KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.
Seo S1, Kim MK.

BIGNASim – Database Structure and Analysis portal for Nucleic Acids Simulation data

BIGNASim

:: DESCRIPTION

BIGNASim is a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

::DEVELOPER

Molecular Modeling and Bioinformatics Unit , IRB Barcelona

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 BIGNASim

:: MORE INFORMATION

Citation

BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data.
Hospital A, Andrio P, Cugnasco C, Codo L, Becerra Y, Dans PD, Battistini F, Torres J, GoñiR, Orozco M, Gelpí JL.
Nucleic Acids Res. 2015 Nov 26. pii: gkv1301