NucleusJ 1.0.3 – Quantifying 3D Images of Interphase Nuclei

NucleusJ 1.0.3

:: DESCRIPTION

NucleusJ is a simple and user-friendly ImageJ plugin dedicated to the characterization of nuclear morphology and chromatin organization in 3D.

::DEVELOPER

NucleusJ team

:: SCREENSHOTS

NucleusJ

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  • Java
  • ImageJ

:: DOWNLOAD

 NucleusJ

 :: MORE INFORMATION

Citation

NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei.
Poulet A, Arganda-Carreras I, Legland D, Probst AV, Andrey P, Tatout C.
Bioinformatics. 2014 Nov 20. pii: btu774.

DCellIQ 1.0 – Quantitative Time-lapse Nuclei Image Analysis

DCellIQ 1.0

:: DESCRIPTION

DCellIQ ( Dynamic Cell Image Quantitator ) is a user-friendly software package that is designed for quantitative time-lapse nuclei image analysis for cell cycle studies, whose key features include automated nuclei detection, segmentation, quantification, tracking, cell cycle phase identification, and statistical analysis of the cell cycle duration.

::DEVELOPER

TMHRI Center for Bioengineering and Informatics

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • MATLAB

:: DOWNLOAD

DCellIQ

:: MORE INFORMATION

ITCN 1.6 – ImageJ Plugin for Image-based Tool for Counting Nuclei

ITCN 1.6

:: DESCRIPTION

ITCN (Image-based Tool for Counting Nuclei) is an ImageJ plugin for counting the number cells within an image. The inputs are:

  1. an estimation of the diameter of a cell
  2. an estimation of the minimum distance between cells
  3. either a region of interest (ROI) selected with ImageJ’s selection tools or a black and white mask image that is white in regions that are to be counted

::DEVELOPER

The Center for Bio-Image Informatics

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

ITCN

:: MORE INFORMATION

Download itcn_.jar to the plugins folder of ImageJ and restart ImageJ.

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