CoolBox 0.3.8 – Jupyter Notebook based Genomic data Visualization toolkit

CoolBox 0.3.8

:: DESCRIPTION

CoolBox is an open-source toolkit for visual analysis of genomics data.

:: DEVELOPER

GangCaoLab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Window
  • Python

:: DOWNLOAD

CoolBox

:: MORE INFORMATION

Citation

Xu W, Zhong Q, Lin D, Zuo Y, Dai J, Li G, Cao G.
CoolBox: a flexible toolkit for visual analysis of genomics data.
BMC Bioinformatics. 2021 Oct 10;22(1):489. doi: 10.1186/s12859-021-04408-w. PMID: 34629071.

BioJupies – Automatically Generates RNA-seq Data Analysis Notebooks

BioJupies

:: DESCRIPTION

BioJupies is a web application that enables the automated creation, storage, and deployment of Jupyter Notebooks containing RNA-seq data analyses.

::DEVELOPER

Ma’ayan Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

BioJupies

:: MORE INFORMATION

Citation

Cell Syst. 2018 Nov 28;7(5):556-561.e3. doi: 10.1016/j.cels.2018.10.007. Epub 2018 Nov 14.
BioJupies: Automated Generation of Interactive Notebooks for RNA-Seq Data Analysis in the Cloud.
Torre D, Lachmann A, Ma’ayan A.