:: DESCRIPTION
EnsembleClust enables fast and accurate clustering of ncRNAs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S48. doi: 10.1186/1471-2105-12-S1-S48.
Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
Saito Y1, Sato K, Sakakibara Y.
:: DESCRIPTION
Magnolia is a program suite to classify RNA sequences as protein-coding or noncoding genes by comparative analysis. It also produces advanced multiple sequence alignment for the data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences
Arnaud Fontaine, Antoine de Monte, Helene Touzet
Nucleic Acids Research 36(Web-Server-Issue): 14-18 (2008)
:: DESCRIPTION
The DASHR database provides information about small non-coding RNA (sncRNA) and their expression in different human tissues and cell types. The content of this database derives from curation, annotation, and computational analysis of small RNA sequencing data sets from multiple sources. Currently the database contains information about more than 46,000 sncRNAs in 42 normal human tissues and cell types from over 30 independent studies.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Yuk Yee Leung, Pavel P. Kuksa, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, and Li-San Wang.
DASHR: database of small human noncoding RNAs.
Nucl. Acids Res., 2015 (Database Issue) doi:10.1093/nar/gkv1188
:: DESCRIPTION
RNApyro is an efficient, linear time and space inside-outside algorithm that computes exact mutational probabilities under secondary structure and evolutionary constraints given as a multiple sequence alignment with a consensus structure.
::DEVELOPER
Computer Science and Biology at McGill
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
J Comput Biol. 2013 Nov;20(11):905-19. doi: 10.1089/cmb.2013.0085. Epub 2013 Oct 17.
Using structural and evolutionary information to detect and correct pyrosequencing errors in noncoding RNAs.
Reinharz V1, Ponty Y, Waldispühl J.
