nFuse 0.2.1

:: DESCRIPTION

nFuse is a tool for detecting fusion transcripts and associated complex genomic rearrangements from matched RNA-seq and whole genome shotgun sequencing.nFuse predicts fusion transcripts and associated CGRs from matched RNA-seq and Whole Genome Shotgun Sequencing (WGSS).

::DEVELOPER

Andrew McPherson (andrew.mcpherson@gmail.com)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• python
• bowtie
• blat
• R package
• GMAP

:: DOWNLOAD

 nFuse

:: MORE INFORMATION

Citation:

McPherson AW, Wu C, Wyatt A, Shah SP, Collins C, Sahinalp SC.
nFuse: Discovery of complex genomic rearrangements in cancer using high-throughput sequencing.
Genome Res. 2012 Jun 28.