AlgorithmTreeFromLabels 1.0 – Creat Nexus files from Classificatory Language labels

AlgorithmTreeFromLabels 1.0

:: DESCRIPTION

AlgorithmTreeFromLabels takes as input a set of classificatory labels and creates a file in a format which can be loaded into Splitstree such that the corresponding phylogeny can be viewed and analyzed.

::DEVELOPER

The ASJP project

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Python

:: DOWNLOAD

 AlgorithmTreeFromLabels

:: MORE INFORMATION

References
Huson, D. H. and D. Bryant. 2006. Application of phylogenetic networks in evolutionary
studies. Mol. Biol. Evol. 23(2): 254-267.

Vim Nexus syntax highlighting – Nexus syntax highlighting files for the Vim editor

Vim Nexus syntax highlighting

:: DESCRIPTION

Vim Nexus syntax highlighting is Nexus syntax highlighting files for the Vim editor . Recognizes many/most of the PAUP/MrBayes commands.

::DEVELOPER

Johan Nylander 

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/ MacOsX

:: DOWNLOAD

 Vim Nexus syntax highlighting

:: MORE INFORMATION

NCL 2.1.18 – NEXUS C++ Class Library

NCL 2.1.18

:: DESCRIPTION

The NCL  (Nexus Class Library) is a C++ library for interpreting data files created according to the NEXUS file format used in phylogenetic systematics and molecular evolution.

::DEVELOPER

The Holder Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Mac OsX / Linux / Windows
  • C++ Compiler

:: DOWNLOAD

  NCL

:: MORE INFORMATION

Citation:

Bioinformatics. 2003 Nov 22;19(17):2330-1.
NCL: a C++ class library for interpreting data files in NEXUS format.
Lewis PO.

NDE 0.5.0 – NEXUS Data Editor

NDE 0.5.0

:: DESCRIPTION

NDE (NEXUS Data Editor) is a program to create and edit NEXUS format data files on computers running Microsoft Windows 95/NT 4.0. The main motivation behind my writing the program was to provide an easy to use data editor similar to that provided in the Macintosh program MacClade (note that NDE has none of the data or tree analysis features of MacClade). The NEXUS format is becoming more widely used on PCs now that DOS and Windows versions of PAUP* are available for testing.

::DEVELOPER

Professor Rod Page

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

NDE

:: MORE INFORMATION

WinIPaup 1.0 – Windows Interface for PAUP to Create NEXUS Files

WinIPaup 1.0

:: DESCRIPTION

WINIPAUP (Windows Interface for PAUP) is an interface allowing the creation of NEXUS files including the data and the commands necessary to the realization of analyzes in PAUP software (D. SWOFFORD).WINIPAUP allows the importation of sequences (nucleotidic and proteic), discrete data, distances matrix, phylogenetic trees and NEXUS files.Moreover the software allows the creation of files which, carried out in PAUP, provide results files usable by MODELTEST software (D. POSADA).

::DEVELOPER

Daniel Montagnon PhD

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

WinIPaup

:: MORE INFORMATION

If you download and use this software please register to be informed for new release and modifications.