D2NGS – Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads

D2NGS

:: DESCRIPTION

D2NGS is a C++ package which is intended to implement a program for the alignment-free comparison of genome sequences using NGS data using d2, d2* and d2S.

::DEVELOPER

Fengzhu Sun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • C++ Compiler

:: DOWNLOAD

 D2NGS

:: MORE INFORMATION

Citation

Song K, Ren J, Zhai ZY, Liu XM, Deng MH, and Sun FZ (2012)
Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract
Research in Computational Molecular Biology, 272-285.

REAL 0.0.31 – REad ALigner for Next-generation Sequencing Reads

REAL 0.0.31

:: DESCRIPTION

REAL is an efficient, accurate, and sensitive tool for aligning short reads obtained from next-generation sequencing. The programme can handle an enormous amount of single-end reads generated by the next-generation Illumina/Solexa Genome Analyzer.

:: DEVELOPER

Solon P. Pissis

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • MacOsX/ Linux

:: DOWNLOAD

 REAL

:: MORE INFORMATION

Citation

Kimon Frousios, Costas S. Iliopoulos, Laurent Mouchard, Solon P. Pissis and German Tischler.
REAL: An efficient REad ALigner for next generation sequencing reads.
In Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology (ACM-BCB 2010), pp.154-159